Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015881068.1_cds_XP_016437639.1_33380
CDS Infomation

[gene=LOC107763666] [db_xref=GeneID:107763666] [protein=serine hydroxymethyltransferase, mitochondrial-like] [protein_id=XP_016437639.1] [location=complement(join(3297..3457,3571..3681,3941..4052,4409..4486,4595..4660,4754..4858,5758..5955,6041..6133,6724..6816,6905..7029,7164..7240,7412..7533,7839..7925,8099..8149,8245..8337))] [gbkey=CDS]
Sequence

ATGGCAATGGCTATGGCTCTTCGTAAACTCTCTTGTGCTTCCTCCATTAAGCTTCTTCGT
CCTCTTTCCAATGGCTCTTCCCTCTATTACATGTCATCTTTCCCTAATCAAGCAATTCGT
GAAAGGGAGGATCCGCGTGTTACGTGGATAAAGCAGCTGAATGCGCCACTTGAGGATATC
GATCCAGAGATCGCCGACATCATTGAGCATGAGAAAGCTAGACAATGGAAGGGTCTTGAG
CTTATCCCTTCAGAGAATTTTACATCATTGTCTGTGATGCAAGCAGTTGGATCAGTAATG
ACCAACAAATACAGTGAAGGGTATCCTGGTGCTAGATACTATGGAGGAAATGAGTACATT
GACATGGCAGAGAGATTGTGTCAAAAACGTGCATTAGAAGTTTTTAACTTGGATCCCACC
AGATGGGGAGTCAACGTTCAGTCGTTGTCTGGATCCCCTTCAAACTTTCAAGTGTACACT
GCTTTATTAAAGCCTCATGAGAGAATTATGGCACTCGATCTTCCTCATGGGGGACATCTG
TCACATGGTTATCAGACTGACACAAAGAAAATTTCTGCTGTGTCTATCTTTTTCGAGACC
ATGCCATACAGATTGGATGAGAGCACAGGTTATATTGATTATGATCAGCTGGAGAAAAGT
GCAGTGCTCTTTCGACCAAAGTTAATTGTTGCTGGTGCAAGTGCTTATGCTCGCTTATAT
GATTATGCACGTATCCGCAAGGTATGTGACAAGCAAAAAGCTGTTCTCTTGGCGGACATG
GCACATATCAGTGGCTTGGTTGCTGCTGGAGTCATTCCTTCTCCTTTTGAGTATGCAGAT
GTTGTTACTACCACAACTCACAAGTCACTTCGTGGTCCACGTGGGGCAATGATCTTTTTC
AGAAAAGGGCTGAAGGAGATAAACAAACAAGGAAAAGAAGTGATGTATGACTATGAAGAT
AAAATCAACCAAGCCGTTTTTCCCGGACTTCAAGGAGGTCCCCACAATCACACAATTTCT
GGCTTAGCCGTTGCTCTGAAACAAGTCATGACACCGGAATACAAGGCATACCAAGAGCAA
GTTCTTAGCAATTGCTCCAAGTTTGCTGAGAGTTTGCTGGCGAACGGATATGATCTTGTG
TCTGGTGGAACTGAGAATCATCTGGTTTTAGTAAACTTAAGAAATAAGGGTATTGATGGC
TCTAGGGTTGAGAAGGTTTTAGAGTCTGTGCATATTGCAGCCAATAAAAACACTGTGCCC
GGTGATGTATCCGCCATGGTGCCTGGTGGCATTCGCATGGGAACCCCAGCTCTGACTTCT
AGAGGATTTATTGAGGAGGATTTTGTGAAAGTGGCTGAATTTTTTGATGCTGCTGTGAAG
TTGGCCCTTAAGGTCAAGGCTGAGACCCAAGGAACAAAGTTGAAGGACTTTGTGGCGACT
TTGAGTTCAGACTCCAAAATTCAATCTGAGATTGCCAGGCTAAGGCAGGACGTTGAGGAC
TATGCAAAACAATTTCCTACTATTGGTTTCGAGAAAGAAACAATGAAATACAAGGATGGA
GCTGGGATCTAG

Peptide Sequence

PEP ID

XP_016437639.1
PEP Infomation

PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Nicotiana tabacum]
Sequence

MAMAMALRKLSCASSIKLLRPLSNGSSLYYMSSFPNQAIREREDPRVTWIKQLNAPLEDI
DPEIADIIEHEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYI
DMAERLCQKRALEVFNLDPTRWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHL
SHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSAVLFRPKLIVAGASAYARLY
DYARIRKVCDKQKAVLLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFF
RKGLKEINKQGKEVMYDYEDKINQAVFPGLQGGPHNHTISGLAVALKQVMTPEYKAYQEQ
VLSNCSKFAESLLANGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVP
GDVSAMVPGGIRMGTPALTSRGFIEEDFVKVAEFFDAAVKLALKVKAETQGTKLKDFVAT
LSSDSKIQSEIARLRQDVEDYAKQFPTIGFEKETMKYKDGAGI

Transcript Sequence

Gene sequence data has not been registered.